tree-wide: reset optind to 0 when GNU extensions in optstring are used

Otherwise, if getopt() and friends are used before parse_argv(), then
the GNU extensions may be ignored.

This should not change any behavior at least now, as we usually use
getopt_long() only once per invocation. But in the next commit,
getopt_long() will be used for other arrays, hence this change will
become necessary.

src/run/run.c

@@ -242,6 +242,9 @@ static int parse_argv(int argc, char *argv[]) {
         assert(argc >= 0);
         assert(argv);
 
+        /* Resetting to 0 forces the invocation of an internal initialization routine of getopt_long()
+         * that checks for GNU extensions in optstring ('-' or '+' at the beginning). */
+        optind = 0;
         while ((c = getopt_long(argc, argv, "+hrH:M:E:p:tPqGdSu:", options, NULL)) >= 0)
 
                 switch (c) {